Journal: PLoS ONE
Article Title: Comprehensive Survey of SNPs in the Affymetrix Exon Array Using the 1000 Genomes Dataset
doi: 10.1371/journal.pone.0009366
Figure Lengend Snippet: The 1000 Genomes Project genotypic data are mapped to the Affymetrix GeneChip Human Exon Array 1.0ST. CEU (Caucasians from Utah, USA) and YRI (Yoruba people from Ibadan, Nigeria) are lymphoblastoid cell lines from the International HapMap Project. Known SNPs are those recorded in the NCBI dbSNP v129 database. Common SNPs are those with minor allele frequencies greater than 5%. Within the exon array, probesets are exon-level and transcript clusters are gene-level.
Article Snippet: The probe, probeset (exon-level) and transcript cluster (gene-level) annotations for the Affymetrix GeneChip Human Exon 1.0ST array were downloaded from the Affymetrix NetAffx Analysis Center ( http://www.affymetrix.com/analysis/index.affx ) (NetAffy build 27).
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